Supplementary Video S1

DeepPhe system sample run: Mention- and Document- level pipeline (0:00:00-0:00:11 hr), Summarization pipeline (0:00:11-0:00:21 hr), results visualization with Neo4J graph database (0:00:21-0:02:00 portion of the video for a breast cancer example and 0:03:07-0:04:09 for a melanoma example), results visualization and analysis with i2b2/tranSMART database (0:02:01-0:03:06 for a breast cancer example).

DeepPhe: A Natural Language Processing System for Extracting Cancer Phenotypes from Clinical Records

Guergana K. Savova, Eugene Tseytlin, Sean Finan, Melissa Castine, Timothy Miller, Olga Medvedeva, David Harris, Harry Hochheiser, Chen Lin, Girish Chavan, and Rebecca S. Jacobson

Cancer Res 2017. 77:e115-e118; doi: 10.1158/0008-5472.CAN-17-0615